COBMAN is a network of FTP and web servers around the world that store identical, up-to-date, versions of anatomical experiments and data submitted to be displayed on openbrainmap.org. COBMAN preferentially accepts experiments that have already been subjected to peer-review and only in rare occasions data will be considered before peer-review. In cases a user needs[...]
Learning objectives: How to do basic navigation in directories and files using R console Writing a for-loop to iterate over directories Vectorizing the for-loop using lapply() Applying any function automatically to a set of images inside folders using the above CONTENT: Background Iteration through for loops Vectorization in R Functions Conclusions Background When you open[...]
Install R, FFTW and OpenCV 3 Install STAN from within R Install wholebrain from within R Install R, FFTW and OpenCV 3 Install from terminal using apt: sudo apt-get install build-essential libcurl4-gnutls-dev libxml2-dev libssl-dev sudo apt-get -y install r-base sudo apt-get install fftw3 fftw3-dev pkg-config WholeBrain requires OpenCV 3.0.0 or higher, currently sudo apt-get for[...]
Please open the video in a new window and follow along the instructions given in the video. If you experience any problem go back and watch the youtube video carefully. Below you find details on the installation steps. Step 1. Install R on Windows. Step 2. Install Rtools. Step 3. Install STAN. Step 4. Install[...]
When you open up R do you see errors like the following appear in red: 1: Setting LC_CTYPE failed, using "C" 2: Setting LC_COLLATE failed, using "C" 3: Setting LC_TIME failed, using "C" 4: Setting LC_MESSAGES failed, using "C" 5: Setting LC_PAPER failed, using "C" To fix this on Mac OSX do the following: Close[...]
Since WholeBrain heavily relies on STAN for statistical computations the following instructions are somewhat adapted from the installation of rstan. Install or Upgrade R 1.1 Check if you have R installed on your Mac. 1.2: Check if you need to upgrade 1.3: Install or upgrade R Install Xcode and its C++ Toolchain 2.1 Determine which version of OS[...]